H5N1 in the USA

23.01.2015

As part of the increased AI surveillance of wild birds, another Eurasian H5 clade 2.3.4.4 virus has been identified through whole genome sequencing of the virus isolate. Introduction of the Eurasian (EA) H5N8 virus into the Pacific Flyway sometime during late 2014 has allowed mixing with North American (AM) lineage viruses and generated new combinations with genes from both EA and AM origin (or “reassortant” viruses) such as the EA/AM H5N2-reassortant detected in Canada and the United States. Such findings are not unexpected as the EA-H5N8 virus continues to circulate.
A novel EA/AM H5N1-reassortant clade 2.3.4.4 was isolated from an American green-winged teal in Whatcom County, Washington. This H5N1 subtype is different from strain circulating in Asia. The gene constellation is as follows: Eurasian lineage genes (PB2, H5, NP, MP >99% identical to A/gyrfalcon/WA/41088/2014 H5N8); North American lineage genes (PB1 {98% identical to A/Northern pintail/Washington/40964/2014 H5N2}, PA, N1, NS of North American LPAI wild bird lineage. The HA cleavage site is compatible with strains that are highly pathogenic.
This novel HPAI EA/AM H5N1-reassortant virus has NOT been found in commercial poultry anywhere in the United States.